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Contents |
6 |
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1 Introduction ?????????????? |
8 |
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1.1 Plant Species and Their Identification |
8 |
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1.2 The Delimitation of Species by Descriptions |
12 |
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1.3 Using Leaves to Diagnose Species |
13 |
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1.4 Computational Botany |
15 |
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1.5 Aims and Objectives |
16 |
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2 Morphometrics: A Brief Review ?????????????? |
17 |
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2.1 Historical Background to Morphometrics |
18 |
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2.1.1 Phase 1: Classical Taxonomy, Evolutionary Theory and Biometry: The Background for Morphometrics |
18 |
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2.1.2 Phase 2: Genetics and Statistical Methods in Evolution, Agronomy and Biosystematics |
20 |
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2.1.3 Phase 3: Multivariate Statistics and Morphometrics |
21 |
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2.1.4 Phase 4: Geometric Morphometrics |
23 |
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2.2 Morphometric Analysis of Leaves |
25 |
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2.2.1 Analysis of Conventional Botanical Descriptors |
26 |
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2.2.2 Analysis of Leaf Outline Shape |
27 |
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2.2.3 Analysis of Leaf Margin Patterns |
29 |
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2.2.4 Analysis of Homologous Landmarks and Semi-landmark Configurations |
29 |
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2.2.5 Fractal Dimensions and Polygon Fitting |
30 |
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2.2.6 Analysis of Leaf Venation Patterns |
30 |
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2.2.7 Analysis of Leaf Texture |
31 |
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2.2.8 Analysis of Other Features of the Leaf Blade |
31 |
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2.3 Morphometrics of Flowers and Other Plant Organs |
31 |
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2.4 Applications |
33 |
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2.4.1 General-Purpose Species Identification |
33 |
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2.4.2 Agriculture |
35 |
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2.4.3 Intraspecific Variation, Geographical Distribution, Climate, Phylogeny |
36 |
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2.5 Summary |
37 |
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3 Feature Extraction ?????????????? |
39 |
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3.1 Leaf Shape |
39 |
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3.1.1 Study of Existing Techniques for Leaf Shape Analysis |
40 |
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3.1.2 Evaluation and Results |
43 |
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3.2 Leaf Texture |
44 |
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3.2.1 Macro-texture |
45 |
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3.2.2 Micro-texture |
46 |
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3.3 Margin Characteristics |
50 |
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3.3.1 Extracting the Margin |
51 |
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3.4 Locating the Apex and Insertion Point |
53 |
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3.4.1 Dynamic Time Warping |
53 |
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3.4.2 Finding the Points of Margin Symmetry |
55 |
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3.5 Venation Patterns |
55 |
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3.5.1 Extraction by Evolved Vein Classifiers |
56 |
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3.5.2 Extraction by Ant Colonies |
59 |
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3.5.3 Results and Comparison of Methods |
61 |
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3.6 Summary |
62 |
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4 Machine Learning for Plant Leaf Analysis ?????????????? |
63 |
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4.1 Incorporating Intra-species Variation into Plant Classification |
63 |
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4.1.1 Utilizing the Hungarian Algorithm for Improved Classification of Leaf Blades |
64 |
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4.1.2 Comparing Leaf Margins Using Dynamic Time Warping |
74 |
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4.2 Combining Different Leaf Features |
75 |
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4.2.1 Probabilistic Classification from K-Nearest-Neighbour |
76 |
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4.2.2 Automatic Feature Selection |
79 |
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4.3 Summary |
84 |
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5 Botanists' Vision ?????????????? |
86 |
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5.1 Comparing the Eye Movements of Botanists and Non-Botanists |
87 |
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5.1.1 Results and Analysis |
88 |
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5.2 Reverse Engineering of Expert Visual Observations |
91 |
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5.2.1 Related Work |
92 |
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5.2.2 Methodology |
93 |
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5.2.3 Evaluation |
97 |
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5.2.4 Summary |
100 |
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References ?????????????? |
101 |
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Index |
114 |
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